NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,404.7 |
| Mean read quality |
14.3 |
| Median read length |
2,060.0 |
| Median read quality |
15.7 |
| Number of reads |
91,600.0 |
| Read length N50 |
6,470.0 |
| STDEV read length |
3,776.2 |
| Total bases |
311,869,199.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
91583 (100.0%) 311.9Mb |
| >Q7 |
91522 (99.9%) 311.9Mb |
| >Q10 |
90677 (99.0%) 309.3Mb |
| >Q12 |
84060 (91.8%) 291.6Mb |
| >Q15 |
55932 (61.1%) 211.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.1 (16) |
| 2 |
41.7 (16) |
| 3 |
41.6 (16) |
| 4 |
41.5 (16) |
| 5 |
40.7 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45149 (17.6) |
| 2 |
41988 (11.5) |
| 3 |
39479 (11.4) |
| 4 |
37767 (11.1) |
| 5 |
37357 (10.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,406.2 |
| Mean read quality |
14.3 |
| Median read length |
2,062.0 |
| Median read quality |
15.7 |
| Number of reads |
91,559.0 |
| Read length N50 |
6,470.0 |
| STDEV read length |
3,776.4 |
| Total bases |
311,868,541.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
91542 (100.0%) 311.9Mb |
| >Q7 |
91481 (99.9%) 311.9Mb |
| >Q10 |
90636 (99.0%) 309.3Mb |
| >Q12 |
84019 (91.8%) 291.6Mb |
| >Q15 |
55891 (61.0%) 211.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.0 (35) |
| 2 |
40.0 (35) |
| 3 |
39.9 (35) |
| 4 |
39.6 (35) |
| 5 |
39.6 (35) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45149 (17.6) |
| 2 |
41988 (11.5) |
| 3 |
39479 (11.4) |
| 4 |
37767 (11.1) |
| 5 |
37357 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot