NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,667.7 |
| Mean read quality |
14.9 |
| Median read length |
1,623.0 |
| Median read quality |
16.4 |
| Number of reads |
343,491.0 |
| Read length N50 |
4,993.0 |
| STDEV read length |
2,950.7 |
| Total bases |
916,332,169.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
343480 (100.0%) 916.3Mb |
| >Q7 |
343447 (100.0%) 916.3Mb |
| >Q10 |
341040 (99.3%) 910.1Mb |
| >Q12 |
322336 (93.8%) 871.3Mb |
| >Q15 |
241913 (70.4%) 706.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.2 (16) |
| 2 |
42.3 (78) |
| 3 |
41.9 (16) |
| 4 |
41.6 (16) |
| 5 |
41.4 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47957 (11.9) |
| 2 |
37022 (14.8) |
| 3 |
36305 (12.5) |
| 4 |
36164 (16.0) |
| 5 |
34558 (14.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,668.4 |
| Mean read quality |
14.9 |
| Median read length |
1,624.0 |
| Median read quality |
16.4 |
| Number of reads |
343,406.0 |
| Read length N50 |
4,993.0 |
| STDEV read length |
2,950.8 |
| Total bases |
916,330,819.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
343395 (100.0%) 916.3Mb |
| >Q7 |
343362 (100.0%) 916.3Mb |
| >Q10 |
340955 (99.3%) 910.1Mb |
| >Q12 |
322251 (93.8%) 871.3Mb |
| >Q15 |
241828 (70.4%) 706.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.3 (78) |
| 2 |
41.4 (27) |
| 3 |
40.4 (27) |
| 4 |
39.7 (58) |
| 5 |
39.3 (52) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47957 (11.9) |
| 2 |
37022 (14.8) |
| 3 |
36305 (12.5) |
| 4 |
36164 (16.0) |
| 5 |
34558 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot