NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,786.4 |
| Mean read quality |
14.3 |
| Median read length |
1,583.0 |
| Median read quality |
15.5 |
| Number of reads |
453,395.0 |
| Read length N50 |
5,328.0 |
| STDEV read length |
3,302.4 |
| Total bases |
1,263,360,208.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
453381 (100.0%) 1263.4Mb |
| >Q7 |
453338 (100.0%) 1263.4Mb |
| >Q10 |
450013 (99.3%) 1254.1Mb |
| >Q12 |
419742 (92.6%) 1195.9Mb |
| >Q15 |
267045 (58.9%) 847.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.5 (17) |
| 2 |
41.7 (29) |
| 3 |
40.7 (29) |
| 4 |
40.3 (22) |
| 5 |
40.1 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60263 (11.5) |
| 2 |
57511 (11.6) |
| 3 |
57308 (12.5) |
| 4 |
56556 (12.4) |
| 5 |
56444 (17.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,786.5 |
| Mean read quality |
14.3 |
| Median read length |
1,584.0 |
| Median read quality |
15.5 |
| Number of reads |
453,381.0 |
| Read length N50 |
5,328.0 |
| STDEV read length |
3,302.4 |
| Total bases |
1,263,359,999.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
453367 (100.0%) 1263.4Mb |
| >Q7 |
453324 (100.0%) 1263.4Mb |
| >Q10 |
449999 (99.3%) 1254.1Mb |
| >Q12 |
419728 (92.6%) 1195.9Mb |
| >Q15 |
267031 (58.9%) 847.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.7 (29) |
| 2 |
40.7 (29) |
| 3 |
40.3 (22) |
| 4 |
39.8 (22) |
| 5 |
39.7 (29) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60263 (11.5) |
| 2 |
57511 (11.6) |
| 3 |
57308 (12.5) |
| 4 |
56556 (12.4) |
| 5 |
56444 (17.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot