NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,562.1 |
| Mean read quality |
15.1 |
| Median read length |
2,245.0 |
| Median read quality |
16.6 |
| Number of reads |
52,541.0 |
| Read length N50 |
6,498.0 |
| STDEV read length |
3,775.4 |
| Total bases |
187,155,306.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52540 (100.0%) 187.2Mb |
| >Q7 |
52532 (100.0%) 187.2Mb |
| >Q10 |
52228 (99.4%) 186.1Mb |
| >Q12 |
49695 (94.6%) 178.8Mb |
| >Q15 |
38425 (73.1%) 149.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.1 (37) |
| 2 |
37.2 (13) |
| 3 |
37.1 (25) |
| 4 |
35.9 (37) |
| 5 |
34.8 (145) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44237 (11.5) |
| 2 |
43888 (12.1) |
| 3 |
37565 (15.2) |
| 4 |
35865 (16.8) |
| 5 |
34061 (18.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,562.4 |
| Mean read quality |
15.1 |
| Median read length |
2,246.0 |
| Median read quality |
16.6 |
| Number of reads |
52,536.0 |
| Read length N50 |
6,498.0 |
| STDEV read length |
3,775.4 |
| Total bases |
187,155,226.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
52535 (100.0%) 187.2Mb |
| >Q7 |
52527 (100.0%) 187.2Mb |
| >Q10 |
52223 (99.4%) 186.1Mb |
| >Q12 |
49690 (94.6%) 178.8Mb |
| >Q15 |
38420 (73.1%) 149.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.1 (37) |
| 2 |
37.1 (25) |
| 3 |
35.9 (37) |
| 4 |
34.8 (145) |
| 5 |
34.7 (37) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44237 (11.5) |
| 2 |
43888 (12.1) |
| 3 |
37565 (15.2) |
| 4 |
35865 (16.8) |
| 5 |
34061 (18.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot