NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,183.4 |
| Mean read quality |
13.9 |
| Median read length |
1,085.0 |
| Median read quality |
15.0 |
| Number of reads |
135,867.0 |
| Read length N50 |
4,658.0 |
| STDEV read length |
2,750.8 |
| Total bases |
296,654,617.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
135864 (100.0%) 296.7Mb |
| >Q7 |
135863 (100.0%) 296.7Mb |
| >Q10 |
134840 (99.2%) 294.1Mb |
| >Q12 |
122468 (90.1%) 277.6Mb |
| >Q15 |
68892 (50.7%) 183.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
36.1 (63) |
| 2 |
35.9 (119) |
| 3 |
35.0 (17) |
| 4 |
34.2 (354) |
| 5 |
33.9 (199) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37870 (11.5) |
| 2 |
35844 (17.6) |
| 3 |
35791 (13.4) |
| 4 |
32220 (16.9) |
| 5 |
30045 (14.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,183.4 |
| Mean read quality |
13.9 |
| Median read length |
1,085.0 |
| Median read quality |
15.0 |
| Number of reads |
135,866.0 |
| Read length N50 |
4,658.0 |
| STDEV read length |
2,750.8 |
| Total bases |
296,654,600.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
135863 (100.0%) 296.7Mb |
| >Q7 |
135862 (100.0%) 296.7Mb |
| >Q10 |
134839 (99.2%) 294.1Mb |
| >Q12 |
122467 (90.1%) 277.6Mb |
| >Q15 |
68891 (50.7%) 183.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
36.1 (63) |
| 2 |
35.9 (119) |
| 3 |
34.2 (354) |
| 4 |
33.9 (199) |
| 5 |
33.5 (117) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37870 (11.5) |
| 2 |
35844 (17.6) |
| 3 |
35791 (13.4) |
| 4 |
32220 (16.9) |
| 5 |
30045 (14.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot