NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,026.0 |
| Mean read quality |
14.2 |
| Median read length |
1,152.0 |
| Median read quality |
15.3 |
| Number of reads |
499,936.0 |
| Read length N50 |
3,757.0 |
| STDEV read length |
2,486.6 |
| Total bases |
1,012,860,291.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
499935 (100.0%) 1012.9Mb |
| >Q7 |
499932 (100.0%) 1012.9Mb |
| >Q10 |
497370 (99.5%) 1006.1Mb |
| >Q12 |
464468 (92.9%) 957.5Mb |
| >Q15 |
282309 (56.5%) 643.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.7 (77) |
| 2 |
39.5 (119) |
| 3 |
37.6 (121) |
| 4 |
37.3 (76) |
| 5 |
36.1 (140) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56487 (11.3) |
| 2 |
54106 (11.0) |
| 3 |
51114 (12.7) |
| 4 |
39950 (11.0) |
| 5 |
39056 (15.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,026.0 |
| Mean read quality |
14.2 |
| Median read length |
1,152.0 |
| Median read quality |
15.3 |
| Number of reads |
499,934.0 |
| Read length N50 |
3,757.0 |
| STDEV read length |
2,486.6 |
| Total bases |
1,012,860,261.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
499933 (100.0%) 1012.9Mb |
| >Q7 |
499930 (100.0%) 1012.9Mb |
| >Q10 |
497368 (99.5%) 1006.1Mb |
| >Q12 |
464466 (92.9%) 957.5Mb |
| >Q15 |
282307 (56.5%) 643.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.7 (77) |
| 2 |
39.5 (119) |
| 3 |
37.6 (121) |
| 4 |
37.3 (76) |
| 5 |
36.1 (140) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56487 (11.3) |
| 2 |
54106 (11.0) |
| 3 |
51114 (12.7) |
| 4 |
39950 (11.0) |
| 5 |
39056 (15.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot