NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,241.4 |
| Mean read quality |
14.2 |
| Median read length |
1,115.0 |
| Median read quality |
15.4 |
| Number of reads |
300,476.0 |
| Read length N50 |
4,745.0 |
| STDEV read length |
2,881.9 |
| Total bases |
673,490,205.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
300475 (100.0%) 673.5Mb |
| >Q7 |
300467 (100.0%) 673.5Mb |
| >Q10 |
297951 (99.2%) 668.3Mb |
| >Q12 |
272998 (90.9%) 635.4Mb |
| >Q15 |
168514 (56.1%) 455.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.2 (25) |
| 2 |
38.7 (243) |
| 3 |
38.4 (25) |
| 4 |
38.0 (28) |
| 5 |
37.8 (217) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
53429 (11.4) |
| 2 |
47333 (12.9) |
| 3 |
43052 (9.9) |
| 4 |
41954 (12.4) |
| 5 |
41225 (12.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,241.5 |
| Mean read quality |
14.2 |
| Median read length |
1,115.0 |
| Median read quality |
15.4 |
| Number of reads |
300,463.0 |
| Read length N50 |
4,745.0 |
| STDEV read length |
2,882.0 |
| Total bases |
673,490,013.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
300462 (100.0%) 673.5Mb |
| >Q7 |
300454 (100.0%) 673.5Mb |
| >Q10 |
297938 (99.2%) 668.3Mb |
| >Q12 |
272985 (90.9%) 635.4Mb |
| >Q15 |
168501 (56.1%) 455.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.2 (25) |
| 2 |
38.7 (243) |
| 3 |
38.4 (25) |
| 4 |
38.0 (28) |
| 5 |
37.8 (217) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
53429 (11.4) |
| 2 |
47333 (12.9) |
| 3 |
43052 (9.9) |
| 4 |
41954 (12.4) |
| 5 |
41225 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot