NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
921.6 |
| Mean read quality |
14.3 |
| Median read length |
426.0 |
| Median read quality |
15.5 |
| Number of reads |
171,417.0 |
| Read length N50 |
1,939.0 |
| STDEV read length |
1,437.7 |
| Total bases |
157,977,457.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
171410 (100.0%) 158.0Mb |
| >Q7 |
171391 (100.0%) 158.0Mb |
| >Q10 |
170412 (99.4%) 157.1Mb |
| >Q12 |
156235 (91.1%) 148.4Mb |
| >Q15 |
99115 (57.8%) 109.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.7 (39) |
| 2 |
40.7 (29) |
| 3 |
40.4 (98) |
| 4 |
39.6 (16) |
| 5 |
39.5 (146) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28117 (12.7) |
| 2 |
27600 (17.8) |
| 3 |
26167 (11.7) |
| 4 |
24431 (15.5) |
| 5 |
24101 (17.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
921.6 |
| Mean read quality |
14.3 |
| Median read length |
426.0 |
| Median read quality |
15.5 |
| Number of reads |
171,411.0 |
| Read length N50 |
1,939.0 |
| STDEV read length |
1,437.7 |
| Total bases |
157,977,358.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
171404 (100.0%) 158.0Mb |
| >Q7 |
171385 (100.0%) 158.0Mb |
| >Q10 |
170406 (99.4%) 157.1Mb |
| >Q12 |
156229 (91.1%) 148.4Mb |
| >Q15 |
99109 (57.8%) 109.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.7 (39) |
| 2 |
40.7 (29) |
| 3 |
40.4 (98) |
| 4 |
39.5 (146) |
| 5 |
38.9 (57) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28117 (12.7) |
| 2 |
27600 (17.8) |
| 3 |
26167 (11.7) |
| 4 |
24431 (15.5) |
| 5 |
24101 (17.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot