NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,063.3 |
| Mean read quality |
15.0 |
| Median read length |
983.0 |
| Median read quality |
16.5 |
| Number of reads |
213,421.0 |
| Read length N50 |
4,481.0 |
| STDEV read length |
2,839.1 |
| Total bases |
440,343,866.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
213418 (100.0%) 440.3Mb |
| >Q7 |
213396 (100.0%) 440.3Mb |
| >Q10 |
211963 (99.3%) 437.5Mb |
| >Q12 |
199438 (93.4%) 419.1Mb |
| >Q15 |
149486 (70.0%) 345.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.8 (16) |
| 2 |
41.0 (125) |
| 3 |
40.7 (55) |
| 4 |
40.3 (42) |
| 5 |
39.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49073 (10.2) |
| 2 |
48341 (10.8) |
| 3 |
47724 (9.5) |
| 4 |
39185 (9.8) |
| 5 |
38899 (12.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,063.7 |
| Mean read quality |
15.0 |
| Median read length |
984.0 |
| Median read quality |
16.5 |
| Number of reads |
213,379.0 |
| Read length N50 |
4,481.0 |
| STDEV read length |
2,839.2 |
| Total bases |
440,343,148.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
213376 (100.0%) 440.3Mb |
| >Q7 |
213354 (100.0%) 440.3Mb |
| >Q10 |
211921 (99.3%) 437.5Mb |
| >Q12 |
199396 (93.4%) 419.1Mb |
| >Q15 |
149444 (70.0%) 345.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.0 (125) |
| 2 |
40.7 (55) |
| 3 |
40.3 (42) |
| 4 |
39.6 (22) |
| 5 |
39.4 (50) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49073 (10.2) |
| 2 |
48341 (10.8) |
| 3 |
47724 (9.5) |
| 4 |
39185 (9.8) |
| 5 |
38899 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot