NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
3,028.9 |
| Mean read quality |
14.5 |
| Median read length |
1,586.0 |
| Median read quality |
15.8 |
| Number of reads |
209,803.0 |
| Read length N50 |
6,266.0 |
| STDEV read length |
3,673.5 |
| Total bases |
635,478,000.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
209803 (100.0%) 635.5Mb |
| >Q7 |
209793 (100.0%) 635.5Mb |
| >Q10 |
208598 (99.4%) 631.6Mb |
| >Q12 |
195383 (93.1%) 606.4Mb |
| >Q15 |
132359 (63.1%) 465.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.6 (16) |
| 2 |
38.3 (106) |
| 3 |
38.1 (27) |
| 4 |
37.6 (67) |
| 5 |
37.5 (51) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45371 (11.7) |
| 2 |
42603 (13.6) |
| 3 |
41853 (11.6) |
| 4 |
38713 (11.8) |
| 5 |
38486 (11.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
3,029.0 |
| Mean read quality |
14.5 |
| Median read length |
1,586.0 |
| Median read quality |
15.8 |
| Number of reads |
209,795.0 |
| Read length N50 |
6,266.0 |
| STDEV read length |
3,673.5 |
| Total bases |
635,477,873.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
209795 (100.0%) 635.5Mb |
| >Q7 |
209785 (100.0%) 635.5Mb |
| >Q10 |
208590 (99.4%) 631.6Mb |
| >Q12 |
195375 (93.1%) 606.4Mb |
| >Q15 |
132351 (63.1%) 465.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.3 (106) |
| 2 |
38.1 (27) |
| 3 |
37.6 (67) |
| 4 |
37.5 (51) |
| 5 |
36.8 (142) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45371 (11.7) |
| 2 |
42603 (13.6) |
| 3 |
41853 (11.6) |
| 4 |
38713 (11.8) |
| 5 |
38486 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot