NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,332.7 |
| Mean read quality |
14.7 |
| Median read length |
1,239.0 |
| Median read quality |
16.1 |
| Number of reads |
284,395.0 |
| Read length N50 |
4,766.0 |
| STDEV read length |
2,829.3 |
| Total bases |
663,406,164.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
284392 (100.0%) 663.4Mb |
| >Q7 |
284372 (100.0%) 663.4Mb |
| >Q10 |
282705 (99.4%) 659.5Mb |
| >Q12 |
265422 (93.3%) 632.5Mb |
| >Q15 |
187748 (66.0%) 503.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.3 (18) |
| 2 |
39.3 (10) |
| 3 |
39.0 (27) |
| 4 |
38.7 (39) |
| 5 |
38.2 (102) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43375 (11.0) |
| 2 |
34431 (14.8) |
| 3 |
31646 (18.5) |
| 4 |
31284 (15.6) |
| 5 |
30736 (11.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,332.7 |
| Mean read quality |
14.7 |
| Median read length |
1,239.0 |
| Median read quality |
16.1 |
| Number of reads |
284,388.0 |
| Read length N50 |
4,766.0 |
| STDEV read length |
2,829.3 |
| Total bases |
663,406,059.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
284385 (100.0%) 663.4Mb |
| >Q7 |
284365 (100.0%) 663.4Mb |
| >Q10 |
282698 (99.4%) 659.5Mb |
| >Q12 |
265415 (93.3%) 632.5Mb |
| >Q15 |
187741 (66.0%) 503.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.0 (27) |
| 2 |
38.7 (39) |
| 3 |
38.2 (102) |
| 4 |
38.0 (57) |
| 5 |
37.9 (175) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43375 (11.0) |
| 2 |
34431 (14.8) |
| 3 |
31646 (18.5) |
| 4 |
31284 (15.6) |
| 5 |
30736 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot