NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,309.8 |
| Mean read quality |
14.7 |
| Median read length |
1,316.0 |
| Median read quality |
16.1 |
| Number of reads |
500,244.0 |
| Read length N50 |
4,431.0 |
| STDEV read length |
2,734.2 |
| Total bases |
1,155,487,306.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
500224 (100.0%) 1155.5Mb |
| >Q7 |
500093 (100.0%) 1155.5Mb |
| >Q10 |
496805 (99.3%) 1148.7Mb |
| >Q12 |
467934 (93.5%) 1100.5Mb |
| >Q15 |
334267 (66.8%) 867.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.0 (60) |
| 2 |
40.8 (65) |
| 3 |
39.8 (74) |
| 4 |
39.7 (39) |
| 5 |
39.4 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47626 (17.3) |
| 2 |
47430 (18.2) |
| 3 |
36804 (16.4) |
| 4 |
36127 (11.1) |
| 5 |
34992 (16.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,309.9 |
| Mean read quality |
14.7 |
| Median read length |
1,316.0 |
| Median read quality |
16.1 |
| Number of reads |
500,228.0 |
| Read length N50 |
4,431.0 |
| STDEV read length |
2,734.2 |
| Total bases |
1,155,487,089.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
500208 (100.0%) 1155.5Mb |
| >Q7 |
500077 (100.0%) 1155.5Mb |
| >Q10 |
496789 (99.3%) 1148.7Mb |
| >Q12 |
467918 (93.5%) 1100.5Mb |
| >Q15 |
334251 (66.8%) 867.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.0 (60) |
| 2 |
40.8 (65) |
| 3 |
39.8 (74) |
| 4 |
39.7 (39) |
| 5 |
39.4 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47626 (17.3) |
| 2 |
47430 (18.2) |
| 3 |
36804 (16.4) |
| 4 |
36127 (11.1) |
| 5 |
34992 (16.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot