NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,371.6 |
| Mean read quality |
15.1 |
| Median read length |
1,372.0 |
| Median read quality |
16.5 |
| Number of reads |
735,091.0 |
| Read length N50 |
4,357.0 |
| STDEV read length |
2,908.9 |
| Total bases |
1,743,344,378.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
735088 (100.0%) 1743.3Mb |
| >Q7 |
735079 (100.0%) 1743.3Mb |
| >Q10 |
731887 (99.6%) 1733.9Mb |
| >Q12 |
698582 (95.0%) 1667.3Mb |
| >Q15 |
535009 (72.8%) 1375.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.6 (149) |
| 2 |
40.6 (107) |
| 3 |
40.5 (27) |
| 4 |
40.2 (281) |
| 5 |
39.5 (94) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62435 (12.1) |
| 2 |
52725 (9.3) |
| 3 |
50988 (19.1) |
| 4 |
44737 (10.8) |
| 5 |
44561 (12.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,371.6 |
| Mean read quality |
15.1 |
| Median read length |
1,372.0 |
| Median read quality |
16.5 |
| Number of reads |
735,088.0 |
| Read length N50 |
4,357.0 |
| STDEV read length |
2,908.9 |
| Total bases |
1,743,344,336.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
735085 (100.0%) 1743.3Mb |
| >Q7 |
735076 (100.0%) 1743.3Mb |
| >Q10 |
731884 (99.6%) 1733.9Mb |
| >Q12 |
698579 (95.0%) 1667.3Mb |
| >Q15 |
535006 (72.8%) 1375.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.6 (149) |
| 2 |
40.6 (107) |
| 3 |
40.5 (27) |
| 4 |
40.2 (281) |
| 5 |
39.5 (94) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62435 (12.1) |
| 2 |
52725 (9.3) |
| 3 |
50988 (19.1) |
| 4 |
44737 (10.8) |
| 5 |
44561 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot