NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,802.6 |
| Mean read quality |
15.1 |
| Median read length |
1,643.0 |
| Median read quality |
16.6 |
| Number of reads |
240,485.0 |
| Read length N50 |
5,191.0 |
| STDEV read length |
3,328.7 |
| Total bases |
673,988,900.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
240481 (100.0%) 674.0Mb |
| >Q7 |
240469 (100.0%) 674.0Mb |
| >Q10 |
238989 (99.4%) 669.1Mb |
| >Q12 |
227095 (94.4%) 639.0Mb |
| >Q15 |
176627 (73.4%) 526.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.4 (86) |
| 2 |
43.3 (18) |
| 3 |
42.7 (18) |
| 4 |
42.3 (18) |
| 5 |
42.2 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60147 (11.3) |
| 2 |
52971 (12.2) |
| 3 |
45167 (11.5) |
| 4 |
45069 (9.7) |
| 5 |
44911 (12.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,803.7 |
| Mean read quality |
15.1 |
| Median read length |
1,644.0 |
| Median read quality |
16.6 |
| Number of reads |
240,392.0 |
| Read length N50 |
5,191.0 |
| STDEV read length |
3,328.9 |
| Total bases |
673,987,278.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
240388 (100.0%) 674.0Mb |
| >Q7 |
240376 (100.0%) 674.0Mb |
| >Q10 |
238896 (99.4%) 669.1Mb |
| >Q12 |
227002 (94.4%) 639.0Mb |
| >Q15 |
176534 (73.4%) 526.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
45.4 (86) |
| 2 |
40.3 (38) |
| 3 |
39.3 (38) |
| 4 |
39.2 (30) |
| 5 |
39.1 (98) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60147 (11.3) |
| 2 |
52971 (12.2) |
| 3 |
45167 (11.5) |
| 4 |
45069 (9.7) |
| 5 |
44911 (12.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot