NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
990.6 |
| Mean read quality |
13.7 |
| Median read length |
403.0 |
| Median read quality |
14.7 |
| Number of reads |
108,864.0 |
| Read length N50 |
2,440.0 |
| STDEV read length |
1,562.8 |
| Total bases |
107,844,946.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
108849 (100.0%) 107.8Mb |
| >Q7 |
108815 (100.0%) 107.8Mb |
| >Q10 |
107594 (98.8%) 107.0Mb |
| >Q12 |
94416 (86.7%) 98.9Mb |
| >Q15 |
49839 (45.8%) 61.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.8 (15) |
| 2 |
41.2 (16) |
| 3 |
40.7 (16) |
| 4 |
39.9 (16) |
| 5 |
39.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36406 (18.1) |
| 2 |
32279 (17.5) |
| 3 |
25296 (16.4) |
| 4 |
24821 (11.8) |
| 5 |
22782 (16.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
991.7 |
| Mean read quality |
13.6 |
| Median read length |
404.0 |
| Median read quality |
14.7 |
| Number of reads |
108,742.0 |
| Read length N50 |
2,440.0 |
| STDEV read length |
1,563.4 |
| Total bases |
107,843,007.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
108727 (100.0%) 107.8Mb |
| >Q7 |
108693 (100.0%) 107.8Mb |
| >Q10 |
107472 (98.8%) 107.0Mb |
| >Q12 |
94294 (86.7%) 98.9Mb |
| >Q15 |
49717 (45.7%) 61.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.3 (131) |
| 2 |
38.1 (28) |
| 3 |
37.8 (32) |
| 4 |
37.5 (25) |
| 5 |
36.9 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36406 (18.1) |
| 2 |
32279 (17.5) |
| 3 |
25296 (16.4) |
| 4 |
24821 (11.8) |
| 5 |
22782 (16.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot