NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
933.7 |
| Mean read quality |
14.4 |
| Median read length |
542.0 |
| Median read quality |
15.7 |
| Number of reads |
208,738.0 |
| Read length N50 |
1,609.0 |
| STDEV read length |
1,115.5 |
| Total bases |
194,890,036.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
208726 (100.0%) 194.9Mb |
| >Q7 |
208689 (100.0%) 194.9Mb |
| >Q10 |
207353 (99.3%) 193.8Mb |
| >Q12 |
191367 (91.7%) 183.4Mb |
| >Q15 |
124419 (59.6%) 134.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.1 (10) |
| 2 |
40.0 (27) |
| 3 |
39.7 (10) |
| 4 |
39.0 (136) |
| 5 |
38.2 (161) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30879 (11.2) |
| 2 |
19962 (15.8) |
| 3 |
19524 (17.2) |
| 4 |
18409 (18.5) |
| 5 |
18234 (16.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
933.8 |
| Mean read quality |
14.4 |
| Median read length |
542.0 |
| Median read quality |
15.7 |
| Number of reads |
208,716.0 |
| Read length N50 |
1,609.0 |
| STDEV read length |
1,115.5 |
| Total bases |
194,889,771.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
208704 (100.0%) 194.9Mb |
| >Q7 |
208667 (100.0%) 194.9Mb |
| >Q10 |
207331 (99.3%) 193.8Mb |
| >Q12 |
191345 (91.7%) 183.4Mb |
| >Q15 |
124397 (59.6%) 134.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.0 (27) |
| 2 |
39.0 (136) |
| 3 |
38.2 (161) |
| 4 |
38.0 (53) |
| 5 |
37.8 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30879 (11.2) |
| 2 |
19962 (15.8) |
| 3 |
19524 (17.2) |
| 4 |
18409 (18.5) |
| 5 |
18234 (16.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot