NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,517.3 |
| Mean read quality |
13.9 |
| Median read length |
791.0 |
| Median read quality |
14.9 |
| Number of reads |
218,400.0 |
| Read length N50 |
2,981.0 |
| STDEV read length |
1,978.5 |
| Total bases |
331,384,602.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
218398 (100.0%) 331.4Mb |
| >Q7 |
218386 (100.0%) 331.4Mb |
| >Q10 |
216970 (99.3%) 329.1Mb |
| >Q12 |
197151 (90.3%) 310.4Mb |
| >Q15 |
106875 (48.9%) 191.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.5 (16) |
| 2 |
40.9 (52) |
| 3 |
40.6 (112) |
| 4 |
40.6 (10) |
| 5 |
39.9 (34) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31776 (15.8) |
| 2 |
28904 (14.9) |
| 3 |
27865 (14.5) |
| 4 |
27808 (15.8) |
| 5 |
27274 (16.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,517.4 |
| Mean read quality |
13.9 |
| Median read length |
791.0 |
| Median read quality |
14.9 |
| Number of reads |
218,386.0 |
| Read length N50 |
2,981.0 |
| STDEV read length |
1,978.5 |
| Total bases |
331,384,383.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
218384 (100.0%) 331.4Mb |
| >Q7 |
218372 (100.0%) 331.4Mb |
| >Q10 |
216956 (99.3%) 329.1Mb |
| >Q12 |
197137 (90.3%) 310.4Mb |
| >Q15 |
106861 (48.9%) 191.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.9 (52) |
| 2 |
40.6 (112) |
| 3 |
39.9 (34) |
| 4 |
37.9 (94) |
| 5 |
37.8 (60) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31776 (15.8) |
| 2 |
28904 (14.9) |
| 3 |
27865 (14.5) |
| 4 |
27808 (15.8) |
| 5 |
27274 (16.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot