NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,321.8 |
| Mean read quality |
13.6 |
| Median read length |
615.0 |
| Median read quality |
14.7 |
| Number of reads |
138,067.0 |
| Read length N50 |
2,811.0 |
| STDEV read length |
1,970.8 |
| Total bases |
182,493,024.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
138055 (100.0%) 182.5Mb |
| >Q7 |
138033 (100.0%) 182.5Mb |
| >Q10 |
136632 (99.0%) 181.1Mb |
| >Q12 |
121082 (87.7%) 169.4Mb |
| >Q15 |
61756 (44.7%) 100.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.5 (27) |
| 2 |
37.2 (62) |
| 3 |
36.6 (27) |
| 4 |
36.3 (35) |
| 5 |
36.2 (181) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37237 (15.0) |
| 2 |
30128 (16.8) |
| 3 |
29725 (15.6) |
| 4 |
29226 (15.3) |
| 5 |
29131 (16.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,321.8 |
| Mean read quality |
13.6 |
| Median read length |
615.0 |
| Median read quality |
14.7 |
| Number of reads |
138,061.0 |
| Read length N50 |
2,811.0 |
| STDEV read length |
1,970.9 |
| Total bases |
182,492,956.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
138049 (100.0%) 182.5Mb |
| >Q7 |
138027 (100.0%) 182.5Mb |
| >Q10 |
136626 (99.0%) 181.1Mb |
| >Q12 |
121076 (87.7%) 169.4Mb |
| >Q15 |
61750 (44.7%) 100.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.5 (27) |
| 2 |
37.2 (62) |
| 3 |
36.6 (27) |
| 4 |
36.3 (35) |
| 5 |
36.2 (181) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37237 (15.0) |
| 2 |
30128 (16.8) |
| 3 |
29725 (15.6) |
| 4 |
29226 (15.3) |
| 5 |
29131 (16.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot