NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
783.1 |
| Mean read quality |
13.6 |
| Median read length |
514.0 |
| Median read quality |
14.5 |
| Number of reads |
136,544.0 |
| Read length N50 |
1,228.0 |
| STDEV read length |
825.4 |
| Total bases |
106,929,943.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
136534 (100.0%) 106.9Mb |
| >Q7 |
136491 (100.0%) 106.9Mb |
| >Q10 |
135166 (99.0%) 106.2Mb |
| >Q12 |
119417 (87.5%) 97.5Mb |
| >Q15 |
57487 (42.1%) 50.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.0 (21) |
| 2 |
42.0 (21) |
| 3 |
40.9 (16) |
| 4 |
39.7 (10) |
| 5 |
39.0 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27020 (16.3) |
| 2 |
22350 (16.9) |
| 3 |
21251 (18.9) |
| 4 |
19030 (16.6) |
| 5 |
18931 (15.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
783.3 |
| Mean read quality |
13.6 |
| Median read length |
514.0 |
| Median read quality |
14.5 |
| Number of reads |
136,511.0 |
| Read length N50 |
1,228.0 |
| STDEV read length |
825.4 |
| Total bases |
106,929,432.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
136501 (100.0%) 106.9Mb |
| >Q7 |
136458 (100.0%) 106.9Mb |
| >Q10 |
135133 (99.0%) 106.2Mb |
| >Q12 |
119384 (87.5%) 97.5Mb |
| >Q15 |
57454 (42.1%) 50.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.0 (21) |
| 2 |
42.0 (21) |
| 3 |
38.0 (21) |
| 4 |
38.0 (21) |
| 5 |
37.4 (21) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27020 (16.3) |
| 2 |
22350 (16.9) |
| 3 |
21251 (18.9) |
| 4 |
19030 (16.6) |
| 5 |
18931 (15.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot