NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
971.8 |
| Mean read quality |
14.4 |
| Median read length |
554.0 |
| Median read quality |
15.6 |
| Number of reads |
157,067.0 |
| Read length N50 |
1,746.0 |
| STDEV read length |
1,141.3 |
| Total bases |
152,632,124.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
157062 (100.0%) 152.6Mb |
| >Q7 |
157026 (100.0%) 152.6Mb |
| >Q10 |
156015 (99.3%) 151.8Mb |
| >Q12 |
143420 (91.3%) 143.4Mb |
| >Q15 |
92623 (59.0%) 104.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.9 (10) |
| 2 |
40.0 (12) |
| 3 |
39.9 (115) |
| 4 |
39.5 (10) |
| 5 |
39.1 (41) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19918 (19.5) |
| 2 |
17937 (19.3) |
| 3 |
17275 (15.5) |
| 4 |
15856 (18.0) |
| 5 |
15791 (16.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
971.9 |
| Mean read quality |
14.4 |
| Median read length |
554.0 |
| Median read quality |
15.6 |
| Number of reads |
157,050.0 |
| Read length N50 |
1,746.0 |
| STDEV read length |
1,141.3 |
| Total bases |
152,631,946.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
157045 (100.0%) 152.6Mb |
| >Q7 |
157009 (100.0%) 152.6Mb |
| >Q10 |
155998 (99.3%) 151.8Mb |
| >Q12 |
143403 (91.3%) 143.4Mb |
| >Q15 |
92606 (59.0%) 104.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.9 (115) |
| 2 |
39.1 (41) |
| 3 |
38.7 (149) |
| 4 |
38.4 (148) |
| 5 |
38.3 (37) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19918 (19.5) |
| 2 |
17937 (19.3) |
| 3 |
17275 (15.5) |
| 4 |
15856 (18.0) |
| 5 |
15791 (16.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot