NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,408.9 |
| Mean read quality |
13.8 |
| Median read length |
757.0 |
| Median read quality |
14.9 |
| Number of reads |
498,592.0 |
| Read length N50 |
2,712.0 |
| STDEV read length |
1,770.4 |
| Total bases |
702,453,251.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
498586 (100.0%) 702.5Mb |
| >Q7 |
498560 (100.0%) 702.5Mb |
| >Q10 |
494597 (99.2%) 697.1Mb |
| >Q12 |
445551 (89.4%) 653.7Mb |
| >Q15 |
236297 (47.4%) 392.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.3 (68) |
| 2 |
38.5 (121) |
| 3 |
38.1 (178) |
| 4 |
38.0 (113) |
| 5 |
38.0 (141) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48380 (9.5) |
| 2 |
29651 (14.8) |
| 3 |
28321 (10.7) |
| 4 |
28167 (11.5) |
| 5 |
27698 (16.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,408.9 |
| Mean read quality |
13.8 |
| Median read length |
757.0 |
| Median read quality |
14.9 |
| Number of reads |
498,588.0 |
| Read length N50 |
2,712.0 |
| STDEV read length |
1,770.4 |
| Total bases |
702,453,211.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
498582 (100.0%) 702.5Mb |
| >Q7 |
498556 (100.0%) 702.5Mb |
| >Q10 |
494593 (99.2%) 697.1Mb |
| >Q12 |
445547 (89.4%) 653.7Mb |
| >Q15 |
236293 (47.4%) 392.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.3 (68) |
| 2 |
38.5 (121) |
| 3 |
38.1 (178) |
| 4 |
38.0 (113) |
| 5 |
38.0 (141) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48380 (9.5) |
| 2 |
29651 (14.8) |
| 3 |
28321 (10.7) |
| 4 |
28167 (11.5) |
| 5 |
27698 (16.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot