NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,053.5 |
| Mean read quality |
14.2 |
| Median read length |
555.0 |
| Median read quality |
15.4 |
| Number of reads |
434,162.0 |
| Read length N50 |
2,008.0 |
| STDEV read length |
1,363.7 |
| Total bases |
457,376,388.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
434146 (100.0%) 457.4Mb |
| >Q7 |
434106 (100.0%) 457.4Mb |
| >Q10 |
431068 (99.3%) 454.5Mb |
| >Q12 |
394372 (90.8%) 429.4Mb |
| >Q15 |
243812 (56.2%) 305.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.3 (35) |
| 2 |
43.2 (17) |
| 3 |
42.2 (16) |
| 4 |
41.9 (35) |
| 5 |
41.7 (10) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28739 (15.9) |
| 2 |
24567 (17.1) |
| 3 |
23732 (15.1) |
| 4 |
22754 (13.0) |
| 5 |
22616 (12.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,053.6 |
| Mean read quality |
14.2 |
| Median read length |
556.0 |
| Median read quality |
15.4 |
| Number of reads |
434,090.0 |
| Read length N50 |
2,008.0 |
| STDEV read length |
1,363.7 |
| Total bases |
457,375,253.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
434074 (100.0%) 457.4Mb |
| >Q7 |
434034 (100.0%) 457.4Mb |
| >Q10 |
430996 (99.3%) 454.5Mb |
| >Q12 |
394300 (90.8%) 429.4Mb |
| >Q15 |
243740 (56.1%) 305.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.3 (35) |
| 2 |
41.9 (35) |
| 3 |
41.2 (35) |
| 4 |
41.2 (35) |
| 5 |
41.1 (35) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28739 (15.9) |
| 2 |
24567 (17.1) |
| 3 |
23732 (15.1) |
| 4 |
22754 (13.0) |
| 5 |
22616 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot