NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,324.7 |
| Mean read quality |
14.3 |
| Median read length |
669.0 |
| Median read quality |
15.6 |
| Number of reads |
148,071.0 |
| Read length N50 |
2,639.0 |
| STDEV read length |
1,824.1 |
| Total bases |
196,146,357.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
148063 (100.0%) 196.1Mb |
| >Q7 |
148033 (100.0%) 196.1Mb |
| >Q10 |
146791 (99.1%) 194.7Mb |
| >Q12 |
134014 (90.5%) 184.2Mb |
| >Q15 |
86305 (58.3%) 137.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.7 (10) |
| 2 |
39.8 (49) |
| 3 |
39.6 (29) |
| 4 |
38.0 (49) |
| 5 |
37.4 (111) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30895 (19.4) |
| 2 |
29582 (14.5) |
| 3 |
28869 (18.0) |
| 4 |
28381 (19.3) |
| 5 |
26397 (19.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,324.7 |
| Mean read quality |
14.3 |
| Median read length |
669.0 |
| Median read quality |
15.6 |
| Number of reads |
148,069.0 |
| Read length N50 |
2,639.0 |
| STDEV read length |
1,824.1 |
| Total bases |
196,146,335.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
148061 (100.0%) 196.1Mb |
| >Q7 |
148031 (100.0%) 196.1Mb |
| >Q10 |
146789 (99.1%) 194.7Mb |
| >Q12 |
134012 (90.5%) 184.2Mb |
| >Q15 |
86303 (58.3%) 137.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.8 (49) |
| 2 |
39.6 (29) |
| 3 |
38.0 (49) |
| 4 |
37.4 (111) |
| 5 |
37.1 (49) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30895 (19.4) |
| 2 |
29582 (14.5) |
| 3 |
28869 (18.0) |
| 4 |
28381 (19.3) |
| 5 |
26397 (19.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot