NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,160.3 |
| Mean read quality |
14.2 |
| Median read length |
574.0 |
| Median read quality |
15.4 |
| Number of reads |
148,499.0 |
| Read length N50 |
2,329.0 |
| STDEV read length |
1,624.0 |
| Total bases |
172,296,742.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
148492 (100.0%) 172.3Mb |
| >Q7 |
148474 (100.0%) 172.3Mb |
| >Q10 |
147075 (99.0%) 171.0Mb |
| >Q12 |
133319 (89.8%) 160.9Mb |
| >Q15 |
83871 (56.5%) 118.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.0 (10) |
| 2 |
40.4 (52) |
| 3 |
39.3 (191) |
| 4 |
39.0 (30) |
| 5 |
38.9 (81) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35942 (15.8) |
| 2 |
31467 (13.7) |
| 3 |
29157 (16.2) |
| 4 |
26987 (13.9) |
| 5 |
26213 (17.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,160.3 |
| Mean read quality |
14.2 |
| Median read length |
574.0 |
| Median read quality |
15.4 |
| Number of reads |
148,494.0 |
| Read length N50 |
2,329.0 |
| STDEV read length |
1,624.0 |
| Total bases |
172,296,676.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
148487 (100.0%) 172.3Mb |
| >Q7 |
148469 (100.0%) 172.3Mb |
| >Q10 |
147070 (99.0%) 171.0Mb |
| >Q12 |
133314 (89.8%) 160.9Mb |
| >Q15 |
83866 (56.5%) 118.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.4 (52) |
| 2 |
39.3 (191) |
| 3 |
39.0 (30) |
| 4 |
38.9 (81) |
| 5 |
37.6 (37) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35942 (15.8) |
| 2 |
31467 (13.7) |
| 3 |
29157 (16.2) |
| 4 |
26987 (13.9) |
| 5 |
26213 (17.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot