NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
666.7 |
| Mean read quality |
13.9 |
| Median read length |
417.0 |
| Median read quality |
15.0 |
| Number of reads |
128,513.0 |
| Read length N50 |
1,068.0 |
| STDEV read length |
757.4 |
| Total bases |
85,680,302.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
128505 (100.0%) 85.7Mb |
| >Q7 |
128493 (100.0%) 85.7Mb |
| >Q10 |
127356 (99.1%) 85.1Mb |
| >Q12 |
114047 (88.7%) 79.2Mb |
| >Q15 |
64513 (50.2%) 50.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.6 (43) |
| 2 |
38.8 (30) |
| 3 |
38.0 (102) |
| 4 |
38.0 (24) |
| 5 |
37.8 (185) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17694 (16.3) |
| 2 |
17394 (10.5) |
| 3 |
17388 (17.9) |
| 4 |
16855 (17.3) |
| 5 |
15675 (15.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
666.7 |
| Mean read quality |
13.9 |
| Median read length |
417.0 |
| Median read quality |
15.0 |
| Number of reads |
128,510.0 |
| Read length N50 |
1,068.0 |
| STDEV read length |
757.4 |
| Total bases |
85,680,263.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
128502 (100.0%) 85.7Mb |
| >Q7 |
128490 (100.0%) 85.7Mb |
| >Q10 |
127353 (99.1%) 85.1Mb |
| >Q12 |
114044 (88.7%) 79.2Mb |
| >Q15 |
64510 (50.2%) 50.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.6 (43) |
| 2 |
38.8 (30) |
| 3 |
38.0 (102) |
| 4 |
38.0 (24) |
| 5 |
37.8 (185) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17694 (16.3) |
| 2 |
17394 (10.5) |
| 3 |
17388 (17.9) |
| 4 |
16855 (17.3) |
| 5 |
15675 (15.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot