NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,815.2 |
| Mean read quality |
13.8 |
| Median read length |
934.0 |
| Median read quality |
14.9 |
| Number of reads |
203,565.0 |
| Read length N50 |
3,721.0 |
| STDEV read length |
2,278.3 |
| Total bases |
369,504,503.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
203561 (100.0%) 369.5Mb |
| >Q7 |
203544 (100.0%) 369.5Mb |
| >Q10 |
201696 (99.1%) 366.6Mb |
| >Q12 |
181326 (89.1%) 344.3Mb |
| >Q15 |
96889 (47.6%) 209.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.5 (10) |
| 2 |
39.3 (45) |
| 3 |
39.1 (45) |
| 4 |
39.0 (27) |
| 5 |
38.4 (45) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29423 (15.6) |
| 2 |
26526 (9.9) |
| 3 |
25324 (11.0) |
| 4 |
25199 (13.0) |
| 5 |
25099 (14.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,815.2 |
| Mean read quality |
13.8 |
| Median read length |
934.0 |
| Median read quality |
14.9 |
| Number of reads |
203,559.0 |
| Read length N50 |
3,721.0 |
| STDEV read length |
2,278.4 |
| Total bases |
369,504,416.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
203555 (100.0%) 369.5Mb |
| >Q7 |
203538 (100.0%) 369.5Mb |
| >Q10 |
201690 (99.1%) 366.6Mb |
| >Q12 |
181320 (89.1%) 344.3Mb |
| >Q15 |
96883 (47.6%) 209.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.3 (45) |
| 2 |
39.1 (45) |
| 3 |
39.0 (27) |
| 4 |
38.4 (45) |
| 5 |
38.3 (35) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
29423 (15.6) |
| 2 |
26526 (9.9) |
| 3 |
25324 (11.0) |
| 4 |
25199 (13.0) |
| 5 |
25099 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot