NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,094.4 |
| Mean read quality |
14.2 |
| Median read length |
946.0 |
| Median read quality |
15.5 |
| Number of reads |
194,550.0 |
| Read length N50 |
4,741.0 |
| STDEV read length |
2,805.2 |
| Total bases |
407,467,498.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
194545 (100.0%) 407.5Mb |
| >Q7 |
194528 (100.0%) 407.5Mb |
| >Q10 |
192734 (99.1%) 404.6Mb |
| >Q12 |
175632 (90.3%) 384.1Mb |
| >Q15 |
112612 (57.9%) 289.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.6 (11) |
| 2 |
40.1 (10) |
| 3 |
37.7 (13) |
| 4 |
37.6 (24) |
| 5 |
37.5 (314) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35151 (11.1) |
| 2 |
32946 (11.8) |
| 3 |
32007 (14.0) |
| 4 |
30840 (16.2) |
| 5 |
30264 (16.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,094.5 |
| Mean read quality |
14.2 |
| Median read length |
946.0 |
| Median read quality |
15.5 |
| Number of reads |
194,545.0 |
| Read length N50 |
4,741.0 |
| STDEV read length |
2,805.3 |
| Total bases |
407,467,443.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
194540 (100.0%) 407.5Mb |
| >Q7 |
194523 (100.0%) 407.5Mb |
| >Q10 |
192729 (99.1%) 404.6Mb |
| >Q12 |
175627 (90.3%) 384.1Mb |
| >Q15 |
112607 (57.9%) 289.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.6 (24) |
| 2 |
37.5 (314) |
| 3 |
36.4 (155) |
| 4 |
36.0 (98) |
| 5 |
35.5 (117) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35151 (11.1) |
| 2 |
32946 (11.8) |
| 3 |
32007 (14.0) |
| 4 |
30840 (16.2) |
| 5 |
30264 (16.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot