NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,943.3 |
| Mean read quality |
14.5 |
| Median read length |
1,056.0 |
| Median read quality |
15.8 |
| Number of reads |
260,739.0 |
| Read length N50 |
3,846.0 |
| STDEV read length |
2,430.2 |
| Total bases |
506,705,720.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
260730 (100.0%) 506.7Mb |
| >Q7 |
260693 (100.0%) 506.7Mb |
| >Q10 |
258910 (99.3%) 503.7Mb |
| >Q12 |
241331 (92.6%) 482.2Mb |
| >Q15 |
162849 (62.5%) 368.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.0 (16) |
| 2 |
40.3 (16) |
| 3 |
40.2 (26) |
| 4 |
39.9 (16) |
| 5 |
39.5 (26) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37899 (12.1) |
| 2 |
35600 (12.1) |
| 3 |
33487 (13.4) |
| 4 |
33325 (10.9) |
| 5 |
31937 (12.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,943.5 |
| Mean read quality |
14.5 |
| Median read length |
1,056.0 |
| Median read quality |
15.8 |
| Number of reads |
260,716.0 |
| Read length N50 |
3,846.0 |
| STDEV read length |
2,430.3 |
| Total bases |
506,705,358.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
260707 (100.0%) 506.7Mb |
| >Q7 |
260670 (100.0%) 506.7Mb |
| >Q10 |
258887 (99.3%) 503.7Mb |
| >Q12 |
241308 (92.6%) 482.2Mb |
| >Q15 |
162826 (62.5%) 368.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.2 (26) |
| 2 |
39.5 (26) |
| 3 |
39.3 (26) |
| 4 |
39.0 (93) |
| 5 |
38.6 (26) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37899 (12.1) |
| 2 |
35600 (12.1) |
| 3 |
33487 (13.4) |
| 4 |
33325 (10.9) |
| 5 |
31937 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot