NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,287.7 |
| Mean read quality |
13.8 |
| Median read length |
870.5 |
| Median read quality |
15.2 |
| Number of reads |
16,712.0 |
| Read length N50 |
5,884.0 |
| STDEV read length |
3,415.1 |
| Total bases |
38,232,386.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16693 (99.9%) 38.2Mb |
| >Q7 |
16646 (99.6%) 38.2Mb |
| >Q10 |
16322 (97.7%) 37.8Mb |
| >Q12 |
14581 (87.2%) 35.5Mb |
| >Q15 |
8807 (52.7%) 24.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.7 (27) |
| 2 |
42.5 (27) |
| 3 |
42.2 (13) |
| 4 |
41.7 (16) |
| 5 |
41.7 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48253 (16.2) |
| 2 |
40088 (14.7) |
| 3 |
34281 (13.6) |
| 4 |
33319 (17.4) |
| 5 |
33091 (16.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,295.0 |
| Mean read quality |
13.8 |
| Median read length |
877.0 |
| Median read quality |
15.2 |
| Number of reads |
16,659.0 |
| Read length N50 |
5,884.0 |
| STDEV read length |
3,418.2 |
| Total bases |
38,231,577.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16640 (99.9%) 38.2Mb |
| >Q7 |
16593 (99.6%) 38.2Mb |
| >Q10 |
16269 (97.7%) 37.8Mb |
| >Q12 |
14528 (87.2%) 35.5Mb |
| >Q15 |
8754 (52.5%) 24.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.7 (27) |
| 2 |
42.5 (27) |
| 3 |
41.2 (41) |
| 4 |
41.1 (27) |
| 5 |
40.8 (41) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48253 (16.2) |
| 2 |
40088 (14.7) |
| 3 |
34281 (13.6) |
| 4 |
33319 (17.4) |
| 5 |
33091 (16.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot