NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,335.2 |
| Mean read quality |
14.2 |
| Median read length |
604.0 |
| Median read quality |
15.4 |
| Number of reads |
289,152.0 |
| Read length N50 |
2,937.0 |
| STDEV read length |
1,895.1 |
| Total bases |
386,065,829.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
289133 (100.0%) 386.1Mb |
| >Q7 |
289089 (100.0%) 386.1Mb |
| >Q10 |
287163 (99.3%) 383.5Mb |
| >Q12 |
262263 (90.7%) 363.5Mb |
| >Q15 |
164145 (56.8%) 268.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.4 (10) |
| 2 |
39.8 (137) |
| 3 |
39.5 (159) |
| 4 |
39.5 (16) |
| 5 |
39.3 (96) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33342 (18.6) |
| 2 |
32066 (16.3) |
| 3 |
31577 (16.1) |
| 4 |
31212 (9.9) |
| 5 |
30395 (16.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,335.2 |
| Mean read quality |
14.2 |
| Median read length |
604.0 |
| Median read quality |
15.4 |
| Number of reads |
289,134.0 |
| Read length N50 |
2,937.0 |
| STDEV read length |
1,895.1 |
| Total bases |
386,065,580.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
289115 (100.0%) 386.1Mb |
| >Q7 |
289071 (100.0%) 386.1Mb |
| >Q10 |
287145 (99.3%) 383.5Mb |
| >Q12 |
262245 (90.7%) 363.5Mb |
| >Q15 |
164127 (56.8%) 268.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.8 (137) |
| 2 |
39.5 (159) |
| 3 |
39.3 (96) |
| 4 |
39.0 (200) |
| 5 |
38.8 (33) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33342 (18.6) |
| 2 |
32066 (16.3) |
| 3 |
31577 (16.1) |
| 4 |
31212 (9.9) |
| 5 |
30395 (16.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot