NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,865.2 |
| Mean read quality |
15.2 |
| Median read length |
922.0 |
| Median read quality |
16.7 |
| Number of reads |
289,795.0 |
| Read length N50 |
3,903.0 |
| STDEV read length |
2,533.1 |
| Total bases |
540,518,203.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
289776 (100.0%) 540.5Mb |
| >Q7 |
289697 (100.0%) 540.5Mb |
| >Q10 |
287906 (99.3%) 537.7Mb |
| >Q12 |
272842 (94.2%) 518.1Mb |
| >Q15 |
209742 (72.4%) 433.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.3 (16) |
| 2 |
42.1 (16) |
| 3 |
42.0 (16) |
| 4 |
41.9 (16) |
| 5 |
41.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70276 (12.5) |
| 2 |
56296 (12.7) |
| 3 |
50589 (17.3) |
| 4 |
47698 (11.3) |
| 5 |
45671 (11.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,866.6 |
| Mean read quality |
15.2 |
| Median read length |
923.0 |
| Median read quality |
16.7 |
| Number of reads |
289,578.0 |
| Read length N50 |
3,903.0 |
| STDEV read length |
2,533.5 |
| Total bases |
540,514,768.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
289559 (100.0%) 540.5Mb |
| >Q7 |
289480 (100.0%) 540.5Mb |
| >Q10 |
287689 (99.3%) 537.7Mb |
| >Q12 |
272625 (94.1%) 518.1Mb |
| >Q15 |
209525 (72.4%) 433.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.2 (175) |
| 2 |
38.8 (196) |
| 3 |
38.1 (223) |
| 4 |
37.8 (194) |
| 5 |
37.7 (178) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70276 (12.5) |
| 2 |
56296 (12.7) |
| 3 |
50589 (17.3) |
| 4 |
47698 (11.3) |
| 5 |
45671 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot