NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,195.1 |
| Mean read quality |
14.1 |
| Median read length |
384.0 |
| Median read quality |
15.4 |
| Number of reads |
86,582.0 |
| Read length N50 |
3,579.0 |
| STDEV read length |
2,149.4 |
| Total bases |
103,474,276.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
86581 (100.0%) 103.5Mb |
| >Q7 |
86571 (100.0%) 103.5Mb |
| >Q10 |
85583 (98.8%) 102.6Mb |
| >Q12 |
76651 (88.5%) 96.7Mb |
| >Q15 |
47606 (55.0%) 73.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.6 (23) |
| 2 |
43.5 (23) |
| 3 |
42.8 (23) |
| 4 |
42.7 (23) |
| 5 |
42.4 (23) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54635 (18.9) |
| 2 |
40280 (18.6) |
| 3 |
34825 (11.5) |
| 4 |
30443 (16.7) |
| 5 |
29770 (17.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,195.4 |
| Mean read quality |
14.1 |
| Median read length |
384.0 |
| Median read quality |
15.4 |
| Number of reads |
86,558.0 |
| Read length N50 |
3,579.0 |
| STDEV read length |
2,149.6 |
| Total bases |
103,473,884.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
86557 (100.0%) 103.5Mb |
| >Q7 |
86547 (100.0%) 103.5Mb |
| >Q10 |
85559 (98.8%) 102.6Mb |
| >Q12 |
76627 (88.5%) 96.7Mb |
| >Q15 |
47582 (55.0%) 73.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
43.6 (23) |
| 2 |
43.5 (23) |
| 3 |
42.8 (23) |
| 4 |
42.7 (23) |
| 5 |
42.4 (23) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54635 (18.9) |
| 2 |
40280 (18.6) |
| 3 |
34825 (11.5) |
| 4 |
30443 (16.7) |
| 5 |
29770 (17.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot