NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,358.4 |
| Mean read quality |
15.1 |
| Median read length |
1,420.0 |
| Median read quality |
16.5 |
| Number of reads |
614,481.0 |
| Read length N50 |
4,274.0 |
| STDEV read length |
2,690.1 |
| Total bases |
1,449,215,027.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
614468 (100.0%) 1449.2Mb |
| >Q7 |
614437 (100.0%) 1449.2Mb |
| >Q10 |
610870 (99.4%) 1439.9Mb |
| >Q12 |
580055 (94.4%) 1379.7Mb |
| >Q15 |
443587 (72.2%) 1125.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.6 (18) |
| 2 |
41.5 (18) |
| 3 |
41.4 (15) |
| 4 |
41.0 (18) |
| 5 |
40.9 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52850 (11.2) |
| 2 |
51838 (11.4) |
| 3 |
48765 (11.2) |
| 4 |
45849 (10.9) |
| 5 |
38418 (11.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,358.6 |
| Mean read quality |
15.1 |
| Median read length |
1,420.0 |
| Median read quality |
16.5 |
| Number of reads |
614,446.0 |
| Read length N50 |
4,274.0 |
| STDEV read length |
2,690.1 |
| Total bases |
1,449,214,465.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
614433 (100.0%) 1449.2Mb |
| >Q7 |
614402 (100.0%) 1449.2Mb |
| >Q10 |
610835 (99.4%) 1439.9Mb |
| >Q12 |
580020 (94.4%) 1379.7Mb |
| >Q15 |
443552 (72.2%) 1125.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.4 (72) |
| 2 |
38.4 (58) |
| 3 |
38.1 (209) |
| 4 |
38.0 (135) |
| 5 |
37.9 (104) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52850 (11.2) |
| 2 |
51838 (11.4) |
| 3 |
48765 (11.2) |
| 4 |
45849 (10.9) |
| 5 |
38418 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot