NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,592.5 |
| Mean read quality |
14.8 |
| Median read length |
1,377.0 |
| Median read quality |
16.2 |
| Number of reads |
813,894.0 |
| Read length N50 |
5,245.0 |
| STDEV read length |
3,220.9 |
| Total bases |
2,110,003,361.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
813889 (100.0%) 2110.0Mb |
| >Q7 |
813865 (100.0%) 2110.0Mb |
| >Q10 |
808942 (99.4%) 2097.1Mb |
| >Q12 |
761730 (93.6%) 2009.2Mb |
| >Q15 |
555172 (68.2%) 1616.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.4 (164) |
| 2 |
39.9 (21) |
| 3 |
39.8 (267) |
| 4 |
39.8 (26) |
| 5 |
39.7 (45) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58366 (11.8) |
| 2 |
54378 (11.5) |
| 3 |
51271 (11.5) |
| 4 |
50983 (11.8) |
| 5 |
46810 (11.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,592.5 |
| Mean read quality |
14.8 |
| Median read length |
1,377.0 |
| Median read quality |
16.2 |
| Number of reads |
813,874.0 |
| Read length N50 |
5,245.0 |
| STDEV read length |
3,220.9 |
| Total bases |
2,110,003,047.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
813869 (100.0%) 2110.0Mb |
| >Q7 |
813845 (100.0%) 2110.0Mb |
| >Q10 |
808922 (99.4%) 2097.1Mb |
| >Q12 |
761710 (93.6%) 2009.2Mb |
| >Q15 |
555152 (68.2%) 1616.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.4 (164) |
| 2 |
39.9 (21) |
| 3 |
39.8 (267) |
| 4 |
39.8 (26) |
| 5 |
39.7 (45) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58366 (11.8) |
| 2 |
54378 (11.5) |
| 3 |
51271 (11.5) |
| 4 |
50983 (11.8) |
| 5 |
46810 (11.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot