NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,691.2 |
| Mean read quality |
14.5 |
| Median read length |
674.0 |
| Median read quality |
15.8 |
| Number of reads |
209,350.0 |
| Read length N50 |
4,123.0 |
| STDEV read length |
2,551.8 |
| Total bases |
354,044,296.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
209349 (100.0%) 354.0Mb |
| >Q7 |
209339 (100.0%) 354.0Mb |
| >Q10 |
207975 (99.3%) 351.9Mb |
| >Q12 |
192466 (91.9%) 335.5Mb |
| >Q15 |
129794 (62.0%) 264.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.4 (17) |
| 2 |
41.0 (48) |
| 3 |
39.9 (68) |
| 4 |
39.9 (130) |
| 5 |
39.8 (61) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50026 (15.6) |
| 2 |
48423 (11.8) |
| 3 |
37602 (15.9) |
| 4 |
33534 (12.1) |
| 5 |
32578 (15.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,691.2 |
| Mean read quality |
14.5 |
| Median read length |
674.0 |
| Median read quality |
15.8 |
| Number of reads |
209,344.0 |
| Read length N50 |
4,123.0 |
| STDEV read length |
2,551.8 |
| Total bases |
354,044,199.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
209343 (100.0%) 354.0Mb |
| >Q7 |
209333 (100.0%) 354.0Mb |
| >Q10 |
207969 (99.3%) 351.9Mb |
| >Q12 |
192460 (91.9%) 335.5Mb |
| >Q15 |
129788 (62.0%) 264.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.0 (48) |
| 2 |
39.9 (68) |
| 3 |
39.9 (130) |
| 4 |
39.8 (61) |
| 5 |
39.0 (82) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50026 (15.6) |
| 2 |
48423 (11.8) |
| 3 |
37602 (15.9) |
| 4 |
33534 (12.1) |
| 5 |
32578 (15.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot