NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
889.4 |
| Mean read quality |
14.2 |
| Median read length |
500.0 |
| Median read quality |
15.4 |
| Number of reads |
134,407.0 |
| Read length N50 |
1,588.0 |
| STDEV read length |
1,079.7 |
| Total bases |
119,541,391.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
134392 (100.0%) 119.5Mb |
| >Q7 |
134342 (100.0%) 119.5Mb |
| >Q10 |
133207 (99.1%) 118.8Mb |
| >Q12 |
121285 (90.2%) 111.9Mb |
| >Q15 |
75541 (56.2%) 79.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.4 (26) |
| 2 |
42.3 (26) |
| 3 |
41.1 (26) |
| 4 |
41.1 (45) |
| 5 |
41.1 (46) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22059 (17.5) |
| 2 |
21324 (17.0) |
| 3 |
19900 (15.5) |
| 4 |
19040 (12.4) |
| 5 |
18175 (17.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
889.6 |
| Mean read quality |
14.2 |
| Median read length |
500.0 |
| Median read quality |
15.4 |
| Number of reads |
134,377.0 |
| Read length N50 |
1,588.0 |
| STDEV read length |
1,079.7 |
| Total bases |
119,540,964.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
134362 (100.0%) 119.5Mb |
| >Q7 |
134312 (100.0%) 119.5Mb |
| >Q10 |
133177 (99.1%) 118.8Mb |
| >Q12 |
121255 (90.2%) 111.9Mb |
| >Q15 |
75511 (56.2%) 79.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.4 (26) |
| 2 |
42.3 (26) |
| 3 |
41.1 (26) |
| 4 |
41.1 (45) |
| 5 |
41.1 (46) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22059 (17.5) |
| 2 |
21324 (17.0) |
| 3 |
19900 (15.5) |
| 4 |
19040 (12.4) |
| 5 |
18175 (17.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot