NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,162.7 |
| Mean read quality |
14.4 |
| Median read length |
693.0 |
| Median read quality |
15.6 |
| Number of reads |
558,338.0 |
| Read length N50 |
2,043.0 |
| STDEV read length |
1,317.1 |
| Total bases |
649,154,333.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
558331 (100.0%) 649.2Mb |
| >Q7 |
558298 (100.0%) 649.2Mb |
| >Q10 |
554564 (99.3%) 645.2Mb |
| >Q12 |
512024 (91.7%) 612.9Mb |
| >Q15 |
332563 (59.6%) 450.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.6 (10) |
| 2 |
39.9 (156) |
| 3 |
39.6 (10) |
| 4 |
39.6 (133) |
| 5 |
39.5 (76) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43832 (19.7) |
| 2 |
26244 (18.3) |
| 3 |
25908 (12.0) |
| 4 |
23626 (13.3) |
| 5 |
22347 (17.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,162.7 |
| Mean read quality |
14.4 |
| Median read length |
693.0 |
| Median read quality |
15.6 |
| Number of reads |
558,325.0 |
| Read length N50 |
2,043.0 |
| STDEV read length |
1,317.1 |
| Total bases |
649,154,166.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
558318 (100.0%) 649.2Mb |
| >Q7 |
558285 (100.0%) 649.2Mb |
| >Q10 |
554551 (99.3%) 645.2Mb |
| >Q12 |
512011 (91.7%) 612.9Mb |
| >Q15 |
332550 (59.6%) 450.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.9 (156) |
| 2 |
39.6 (133) |
| 3 |
39.5 (76) |
| 4 |
39.0 (172) |
| 5 |
38.7 (42) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
43832 (19.7) |
| 2 |
26244 (18.3) |
| 3 |
25908 (12.0) |
| 4 |
23626 (13.3) |
| 5 |
22347 (17.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot