NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
635.1 |
| Mean read quality |
14.2 |
| Median read length |
404.0 |
| Median read quality |
15.3 |
| Number of reads |
149,745.0 |
| Read length N50 |
987.0 |
| STDEV read length |
684.3 |
| Total bases |
95,109,837.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
149734 (100.0%) 95.1Mb |
| >Q7 |
149708 (100.0%) 95.1Mb |
| >Q10 |
148753 (99.3%) 94.6Mb |
| >Q12 |
136283 (91.0%) 88.8Mb |
| >Q15 |
82282 (54.9%) 58.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
44.4 (16) |
| 2 |
42.6 (16) |
| 3 |
42.5 (38) |
| 4 |
42.2 (16) |
| 5 |
41.9 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17314 (17.2) |
| 2 |
16876 (17.5) |
| 3 |
16021 (18.1) |
| 4 |
13946 (16.8) |
| 5 |
12994 (17.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
635.3 |
| Mean read quality |
14.2 |
| Median read length |
404.0 |
| Median read quality |
15.3 |
| Number of reads |
149,696.0 |
| Read length N50 |
987.0 |
| STDEV read length |
684.4 |
| Total bases |
95,109,062.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
149685 (100.0%) 95.1Mb |
| >Q7 |
149659 (100.0%) 95.1Mb |
| >Q10 |
148704 (99.3%) 94.6Mb |
| >Q12 |
136234 (91.0%) 88.8Mb |
| >Q15 |
82233 (54.9%) 58.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.5 (38) |
| 2 |
41.1 (30) |
| 3 |
40.1 (41) |
| 4 |
40.0 (109) |
| 5 |
40.0 (140) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17314 (17.2) |
| 2 |
16876 (17.5) |
| 3 |
16021 (18.1) |
| 4 |
13946 (16.8) |
| 5 |
12994 (17.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot