NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,730.8 |
| Mean read quality |
14.3 |
| Median read length |
787.0 |
| Median read quality |
15.6 |
| Number of reads |
229,278.0 |
| Read length N50 |
3,908.0 |
| STDEV read length |
2,334.4 |
| Total bases |
396,838,006.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
229273 (100.0%) 396.8Mb |
| >Q7 |
229232 (100.0%) 396.8Mb |
| >Q10 |
227341 (99.2%) 394.4Mb |
| >Q12 |
208435 (90.9%) 375.8Mb |
| >Q15 |
134920 (58.8%) 286.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.5 (46) |
| 2 |
41.1 (35) |
| 3 |
40.7 (16) |
| 4 |
39.9 (36) |
| 5 |
39.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30812 (17.8) |
| 2 |
27223 (15.0) |
| 3 |
26165 (14.5) |
| 4 |
26087 (17.1) |
| 5 |
25994 (16.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,730.9 |
| Mean read quality |
14.3 |
| Median read length |
787.0 |
| Median read quality |
15.6 |
| Number of reads |
229,269.0 |
| Read length N50 |
3,908.0 |
| STDEV read length |
2,334.4 |
| Total bases |
396,837,881.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
229264 (100.0%) 396.8Mb |
| >Q7 |
229223 (100.0%) 396.8Mb |
| >Q10 |
227332 (99.2%) 394.4Mb |
| >Q12 |
208426 (90.9%) 375.8Mb |
| >Q15 |
134911 (58.8%) 286.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.5 (46) |
| 2 |
41.1 (35) |
| 3 |
39.9 (36) |
| 4 |
39.6 (50) |
| 5 |
39.4 (31) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30812 (17.8) |
| 2 |
27223 (15.0) |
| 3 |
26165 (14.5) |
| 4 |
26087 (17.1) |
| 5 |
25994 (16.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot