NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,138.4 |
| Mean read quality |
13.4 |
| Median read length |
398.0 |
| Median read quality |
14.5 |
| Number of reads |
18,765.0 |
| Read length N50 |
3,150.0 |
| STDEV read length |
1,955.5 |
| Total bases |
21,361,886.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18748 (99.9%) 21.4Mb |
| >Q7 |
18718 (99.7%) 21.4Mb |
| >Q10 |
18372 (97.9%) 21.1Mb |
| >Q12 |
15748 (83.9%) 19.4Mb |
| >Q15 |
7939 (42.3%) 11.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.6 (33) |
| 2 |
41.4 (33) |
| 3 |
40.9 (33) |
| 4 |
40.7 (33) |
| 5 |
40.7 (33) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42188 (18.4) |
| 2 |
28102 (17.3) |
| 3 |
24865 (9.8) |
| 4 |
23248 (16.3) |
| 5 |
22845 (17.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,140.9 |
| Mean read quality |
13.4 |
| Median read length |
400.0 |
| Median read quality |
14.5 |
| Number of reads |
18,723.0 |
| Read length N50 |
3,150.0 |
| STDEV read length |
1,957.0 |
| Total bases |
21,361,232.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18706 (99.9%) 21.4Mb |
| >Q7 |
18676 (99.7%) 21.4Mb |
| >Q10 |
18330 (97.9%) 21.1Mb |
| >Q12 |
15706 (83.9%) 19.4Mb |
| >Q15 |
7897 (42.2%) 11.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.6 (33) |
| 2 |
41.4 (33) |
| 3 |
40.9 (33) |
| 4 |
40.7 (33) |
| 5 |
40.7 (33) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42188 (18.4) |
| 2 |
28102 (17.3) |
| 3 |
24865 (9.8) |
| 4 |
23248 (16.3) |
| 5 |
22845 (17.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot