NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,440.4 |
| Mean read quality |
13.7 |
| Median read length |
787.0 |
| Median read quality |
14.8 |
| Number of reads |
144,084.0 |
| Read length N50 |
2,674.0 |
| STDEV read length |
1,876.2 |
| Total bases |
207,541,193.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
144076 (100.0%) 207.5Mb |
| >Q7 |
144054 (100.0%) 207.5Mb |
| >Q10 |
142873 (99.2%) 205.8Mb |
| >Q12 |
128538 (89.2%) 192.8Mb |
| >Q15 |
66498 (46.2%) 113.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.2 (10) |
| 2 |
38.2 (10) |
| 3 |
38.0 (103) |
| 4 |
37.2 (10) |
| 5 |
37.0 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36852 (13.5) |
| 2 |
34635 (15.1) |
| 3 |
31845 (17.2) |
| 4 |
30909 (12.7) |
| 5 |
30392 (14.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,440.5 |
| Mean read quality |
13.7 |
| Median read length |
787.0 |
| Median read quality |
14.8 |
| Number of reads |
144,077.0 |
| Read length N50 |
2,674.0 |
| STDEV read length |
1,876.2 |
| Total bases |
207,541,123.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
144069 (100.0%) 207.5Mb |
| >Q7 |
144047 (100.0%) 207.5Mb |
| >Q10 |
142866 (99.2%) 205.8Mb |
| >Q12 |
128531 (89.2%) 192.8Mb |
| >Q15 |
66491 (46.1%) 113.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.0 (103) |
| 2 |
37.0 (20) |
| 3 |
34.0 (128) |
| 4 |
33.8 (207) |
| 5 |
33.8 (156) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36852 (13.5) |
| 2 |
34635 (15.1) |
| 3 |
31845 (17.2) |
| 4 |
30909 (12.7) |
| 5 |
30392 (14.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot