NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,251.5 |
| Mean read quality |
14.3 |
| Median read length |
634.0 |
| Median read quality |
15.6 |
| Number of reads |
296,750.0 |
| Read length N50 |
2,509.0 |
| STDEV read length |
1,658.9 |
| Total bases |
371,389,366.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
296735 (100.0%) 371.4Mb |
| >Q7 |
296699 (100.0%) 371.4Mb |
| >Q10 |
294403 (99.2%) 369.2Mb |
| >Q12 |
269669 (90.9%) 350.1Mb |
| >Q15 |
174861 (58.9%) 261.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.2 (39) |
| 2 |
39.0 (16) |
| 3 |
38.7 (10) |
| 4 |
38.5 (131) |
| 5 |
38.5 (40) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33753 (17.4) |
| 2 |
28074 (11.5) |
| 3 |
27189 (14.1) |
| 4 |
25118 (11.0) |
| 5 |
24474 (19.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,251.6 |
| Mean read quality |
14.3 |
| Median read length |
634.0 |
| Median read quality |
15.6 |
| Number of reads |
296,736.0 |
| Read length N50 |
2,509.0 |
| STDEV read length |
1,658.9 |
| Total bases |
371,389,177.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
296721 (100.0%) 371.4Mb |
| >Q7 |
296685 (100.0%) 371.4Mb |
| >Q10 |
294389 (99.2%) 369.2Mb |
| >Q12 |
269655 (90.9%) 350.1Mb |
| >Q15 |
174847 (58.9%) 261.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
40.2 (39) |
| 2 |
38.5 (131) |
| 3 |
38.5 (40) |
| 4 |
37.7 (97) |
| 5 |
37.6 (39) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33753 (17.4) |
| 2 |
28074 (11.5) |
| 3 |
27189 (14.1) |
| 4 |
25118 (11.0) |
| 5 |
24474 (19.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot