NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,141.6 |
| Mean read quality |
13.7 |
| Median read length |
957.0 |
| Median read quality |
14.8 |
| Number of reads |
130,018.0 |
| Read length N50 |
4,914.0 |
| STDEV read length |
2,997.7 |
| Total bases |
278,447,958.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
130009 (100.0%) 278.4Mb |
| >Q7 |
129978 (100.0%) 278.4Mb |
| >Q10 |
128642 (98.9%) 275.9Mb |
| >Q12 |
114896 (88.4%) 259.1Mb |
| >Q15 |
60305 (46.4%) 157.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
42.3 (10) |
| 2 |
39.3 (38) |
| 3 |
39.0 (27) |
| 4 |
38.9 (143) |
| 5 |
38.9 (27) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48778 (16.4) |
| 2 |
43584 (13.1) |
| 3 |
41652 (11.3) |
| 4 |
41622 (12.4) |
| 5 |
41453 (12.0) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,141.8 |
| Mean read quality |
13.7 |
| Median read length |
957.0 |
| Median read quality |
14.8 |
| Number of reads |
130,007.0 |
| Read length N50 |
4,914.0 |
| STDEV read length |
2,997.7 |
| Total bases |
278,447,794.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
129998 (100.0%) 278.4Mb |
| >Q7 |
129967 (100.0%) 278.4Mb |
| >Q10 |
128631 (98.9%) 275.9Mb |
| >Q12 |
114885 (88.4%) 259.1Mb |
| >Q15 |
60294 (46.4%) 157.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
39.3 (38) |
| 2 |
39.0 (27) |
| 3 |
38.9 (143) |
| 4 |
38.9 (27) |
| 5 |
38.4 (36) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48778 (16.4) |
| 2 |
43584 (13.1) |
| 3 |
41652 (11.3) |
| 4 |
41622 (12.4) |
| 5 |
41453 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot