NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,716.7 |
| Mean read quality |
13.8 |
| Median read length |
764.0 |
| Median read quality |
14.9 |
| Number of reads |
174,244.0 |
| Read length N50 |
3,860.0 |
| STDEV read length |
2,418.5 |
| Total bases |
299,129,269.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
174236 (100.0%) 299.1Mb |
| >Q7 |
174210 (100.0%) 299.1Mb |
| >Q10 |
172620 (99.1%) 296.8Mb |
| >Q12 |
154769 (88.8%) 279.2Mb |
| >Q15 |
82839 (47.5%) 172.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.5 (23) |
| 2 |
40.2 (23) |
| 3 |
39.2 (160) |
| 4 |
37.4 (23) |
| 5 |
37.3 (96) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39120 (12.8) |
| 2 |
38223 (14.0) |
| 3 |
35277 (16.6) |
| 4 |
33693 (16.2) |
| 5 |
32153 (16.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,716.8 |
| Mean read quality |
13.8 |
| Median read length |
764.0 |
| Median read quality |
14.9 |
| Number of reads |
174,240.0 |
| Read length N50 |
3,860.0 |
| STDEV read length |
2,418.5 |
| Total bases |
299,129,222.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
174232 (100.0%) 299.1Mb |
| >Q7 |
174206 (100.0%) 299.1Mb |
| >Q10 |
172616 (99.1%) 296.8Mb |
| >Q12 |
154765 (88.8%) 279.2Mb |
| >Q15 |
82835 (47.5%) 172.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
41.5 (23) |
| 2 |
40.2 (23) |
| 3 |
39.2 (160) |
| 4 |
37.4 (23) |
| 5 |
37.3 (96) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
39120 (12.8) |
| 2 |
38223 (14.0) |
| 3 |
35277 (16.6) |
| 4 |
33693 (16.2) |
| 5 |
32153 (16.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot