NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,498.9 |
| Mean read quality |
9.0 |
| Median read length |
332.0 |
| Median read quality |
9.6 |
| Number of reads |
2,563.0 |
| Read length N50 |
6,901.0 |
| STDEV read length |
3,430.6 |
| Total bases |
3,841,729.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2563 (100.0%) 3.8Mb |
| >Q7 |
2518 (98.2%) 3.8Mb |
| >Q10 |
1128 (44.0%) 2.3Mb |
| >Q12 |
437 (17.1%) 0.9Mb |
| >Q15 |
32 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.3 (121) |
| 2 |
18.1 (183) |
| 3 |
17.8 (325) |
| 4 |
17.2 (254) |
| 5 |
17.0 (137) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
38837 (7.9) |
| 2 |
36380 (11.6) |
| 3 |
36297 (10.4) |
| 4 |
31406 (10.6) |
| 5 |
31055 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot