NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,289.4 |
| Mean read quality |
8.5 |
| Median read length |
1,018.0 |
| Median read quality |
9.1 |
| Number of reads |
1,945.0 |
| Read length N50 |
9,553.0 |
| STDEV read length |
4,935.7 |
| Total bases |
6,397,787.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1936 (99.5%) 6.4Mb |
| >Q7 |
1784 (91.7%) 6.4Mb |
| >Q10 |
705 (36.2%) 2.6Mb |
| >Q12 |
225 (11.6%) 0.8Mb |
| >Q15 |
8 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (150) |
| 2 |
16.1 (424) |
| 3 |
15.7 (359) |
| 4 |
15.5 (412) |
| 5 |
15.3 (3539) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
38320 (8.2) |
| 2 |
36053 (7.9) |
| 3 |
31850 (12.6) |
| 4 |
29998 (11.2) |
| 5 |
29861 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot