NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,646.8 |
| Mean read quality |
10.7 |
| Median read length |
1,091.0 |
| Median read quality |
11.7 |
| Number of reads |
1,038,322.0 |
| Read length N50 |
6,270.0 |
| STDEV read length |
3,741.2 |
| Total bases |
2,748,269,067.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1036646 (99.8%) 2747.7Mb |
| >Q7 |
1034299 (99.6%) 2746.5Mb |
| >Q10 |
847838 (81.7%) 2259.5Mb |
| >Q12 |
430539 (41.5%) 1269.6Mb |
| >Q15 |
3339 (0.3%) 4.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (396) |
| 2 |
17.6 (377) |
| 3 |
17.5 (217) |
| 4 |
17.4 (562) |
| 5 |
17.4 (537) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
76480 (12.4) |
| 2 |
75503 (11.8) |
| 3 |
71448 (8.9) |
| 4 |
60652 (8.8) |
| 5 |
60392 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot