NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,421.5 |
| Mean read quality |
11.0 |
| Median read length |
907.0 |
| Median read quality |
12.4 |
| Number of reads |
2,489,682.0 |
| Read length N50 |
6,512.0 |
| STDEV read length |
3,739.1 |
| Total bases |
6,028,835,941.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2470064 (99.2%) 6023.2Mb |
| >Q7 |
2455611 (98.6%) 6016.9Mb |
| >Q10 |
2075520 (83.4%) 5278.1Mb |
| >Q12 |
1407579 (56.5%) 3869.9Mb |
| >Q15 |
114885 (4.6%) 232.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.0 (298) |
| 2 |
20.2 (224) |
| 3 |
20.2 (477) |
| 4 |
20.0 (426) |
| 5 |
19.9 (489) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71237 (8.9) |
| 2 |
67043 (8.6) |
| 3 |
61589 (9.5) |
| 4 |
60338 (8.8) |
| 5 |
57393 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot