NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,382.3 |
| Mean read quality |
10.6 |
| Median read length |
1,036.0 |
| Median read quality |
11.7 |
| Number of reads |
509,428.0 |
| Read length N50 |
5,794.0 |
| STDEV read length |
3,949.0 |
| Total bases |
1,213,589,082.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
508973 (99.9%) 1213.5Mb |
| >Q7 |
508253 (99.8%) 1213.2Mb |
| >Q10 |
367139 (72.1%) 903.9Mb |
| >Q12 |
235002 (46.1%) 612.0Mb |
| >Q15 |
24723 (4.9%) 47.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.0 (423) |
| 2 |
20.4 (194) |
| 3 |
20.1 (211) |
| 4 |
19.9 (655) |
| 5 |
19.8 (189) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
101699 (7.8) |
| 2 |
96550 (13.5) |
| 3 |
90322 (8.2) |
| 4 |
79810 (11.3) |
| 5 |
79680 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot