NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,239.6 |
| Mean read quality |
9.7 |
| Median read length |
608.0 |
| Median read quality |
11.0 |
| Number of reads |
1,593,519.0 |
| Read length N50 |
2,335.0 |
| STDEV read length |
2,038.6 |
| Total bases |
1,975,405,225.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1543331 (96.9%) 1962.1Mb |
| >Q7 |
1520190 (95.4%) 1951.6Mb |
| >Q10 |
1078961 (67.7%) 1457.4Mb |
| >Q12 |
506893 (31.8%) 721.4Mb |
| >Q15 |
14749 (0.9%) 11.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.9 (331) |
| 2 |
19.8 (280) |
| 3 |
19.6 (257) |
| 4 |
19.0 (218) |
| 5 |
18.9 (186) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
76715 (11.5) |
| 2 |
61435 (8.8) |
| 3 |
53826 (8.2) |
| 4 |
51551 (9.1) |
| 5 |
51357 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot